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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs4982695 chr14:23322613 C/T 8.36E-6 407 11.43 15.45 15.83 KM Plot
LGG rs505601 chr18:34280131 A/G 3.71E-6 407 10.77 18.55 14.65 KM Plot
LGG rs520111 chr9:3252752 A/C 9.05E-5 407 15.63 12.65 0 KM Plot
LGG rs535266 chr5:43111398 A/C 0.000211 391 15.47 14.97 7.13 KM Plot
LGG rs546194 chr5:43115826 C/T 0.000205 392 15.47 14.8 7.13 KM Plot
LGG rs55639853 chr16:67459078 C/G 9.53E-6 405 15.2 15.33 19.2 KM Plot
LGG rs55649039 chr12:102203165 C/A 2.43E-7 400 14.37 19.5 13.15 KM Plot
LGG rs55668869 chr3:126268098 C/T 3.78E-5 404 9.87 14.77 15.78 KM Plot
LGG rs55693332 chr11:3005187 G/A 0.000225 400 15.57 13.23 11.8 KM Plot
LGG rs55699221 chr6:35985409 CAACAA/C 0.000156 397 10.5 15.18 16.1 KM Plot
LGG rs55703302 chr1:159069645 TCCC/T 7.23E-6 401 17.83 13.7 15.47 KM Plot
LGG rs55708963 chr10:925712 C/A 1.95E-5 406 15.2 15.72 12.17 KM Plot
LGG rs55711803 chr12:102297262 A/G 0.000174 403 14.5 19.17 13.15 KM Plot
LGG rs55727364 chr3:100900369 C/G 7.53E-6 396 15.7 14.48 8.43 KM Plot
LGG rs55742804 chr8:1732407 C/T 1.58E-6 396 15.33 15.57 5.42 KM Plot